Safety and centrifugation

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Modern centrifuges are not only highly sophisticated but also relatively sturdy pieces of biochemical equipment that incorporate many safety features. Rotor chambers of high-speed and ultracentrifuges are always enclosed in heavy armour plating. Most centrifuges are designed to buffer a certain degree of imbalance and are usually equipped with an automatic switch-off mode. However, even in a well-balanced rotor, tube cracking during a centrifugation run might cause severe imbalance resulting in dangerous vibrations. When the rotor can only be partially loaded, the order of tubes must be organised according to the manufacturer’s instructions, so that the load is correctly distributed. This is important not only for ultracentrifugation with enormous centrifugal fields, but also for both small- and large-capacity bench centrifuges where the rotors are usually mounted on a more rigid suspension. When using swingingbucket rotors, it is important always to load all buckets with their caps properly screwed on. Even if only two tubes are loaded with solutions, the empty swinging buckets also have to be assembled since they form an integral part of the overall balance of the rotor system. In some swinging-bucket rotors, individual rotor buckets are numbered and should not be interchanged between their designated positions on similarly numbered hinge pins. Centrifugation runs using swinging-bucket rotors are

85 3.3 Types, care and safety aspects of centrifuges

usually set up with low acceleration and deceleration rates, as to avoid any disturbance of delicate gradients, and reduce the risk of disturbing bucket attachment. This practice also avoids the occurrence of sudden imbalances due to tube deformation or cracking and thus eliminates potentially dangerous vibrations. Generally, safety and good laboratory practice are important aspects of all research projects and the awareness of the exposure to potentially harmful substances should be a concern for every biochemist. If you use dangerous chemicals, potentially infectious material or radioactive substances during centrifugation protocols, refer to up-to-date safety manuals and the safety statement of your individual department. Perform mock runs of important experiments in order to avoid the loss of precious specimens or expensive chemicals. As with all other biochemical procedures, experiments should never be rushed, and protective clothing should be worn at all times. Centrifuge tubes should be handled slowly and carefully so as not to disturb pellets, bands of separated particles or unstable gradients. To help you choose the right kind of centrifuge tube for a particular application, the manufacturers of rotors usually give detailed recommendation of suitable materials. For safety reasons and to guarantee experimental success, it is important to make sure that individual centrifuge tubes are chemically resistant to solvents used, have the right capacity for sample loading, can be used in the designated type of rotor and are able to withstand the maximum centrifugal forces and temperature range of a particular centrifuge. In fixed-angle rotors, large centrifugal forces tend to cause a collapse of centrifuge tubes, making thick-walled tubes the choice for these rotors. The volume of liquid and the sealing mechanisms of these tubes are very important for the integrity of the run and should be done according to manufacturer’s instructions. In contrast, swinging-bucket rotor tubes are better protected from deformation and usually thin-walled polyallomer tubes are used. An important safety aspect is the proper handling of separated biological particles following centrifugation. In order to perform post-centrifugation analysis of individual fractions, centrifugation tubes often have to be punctured or sliced. For example, separated vesicle bands can be harvested from the pierced bottom of the centrifuge tube or can be collected by slicing of the tube following quick-freezing. If samples have been pre-incubated with radioactive markers or toxic ligands, contamination of the centrifugation chamber and rotor cavities or buckets should be avoided. If centrifugal separation processes have to be performed routinely with a potentially harmful substance, it makes sense to dedicate a particular centrifuge and accompanying rotors for this work and thereby eliminate the potential of cross-contamination.

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